Index

_

__call__() (neurocarto.probe_npx.select.ElectrodeSelector method) (neurocarto.util.edit.script.BlueprintScript method) (neurocarto.util.edit.script.BlueprintScriptInfo method) __delitem__() (neurocarto.util.util_blueprint.BlueprintFunctions method) __init__() (neurocarto.config.CartoConfig method) (neurocarto.main_app.CartoApp method) (neurocarto.main_index.CartoAppIndex method) (neurocarto.probe_npx.npx.ChannelHasUsedError method) (neurocarto.probe_npx.npx.ChannelMap method) (neurocarto.probe_npx.npx.Electrode method) (neurocarto.probe_npx.select.ElectrodeSelector method) (neurocarto.probe_npx.views.NpxBadElectrodesView method) (neurocarto.probe_npx.views.NpxReferenceControl method) (neurocarto.util.atlas_slice.SliceView method) (neurocarto.util.atlas_struct.Structures method) (neurocarto.util.bokeh_app.BokehApplication method) (neurocarto.util.bokeh_util.ButtonFactory method) (neurocarto.util.bokeh_util.PathAutocompleteInput method) (neurocarto.util.bokeh_util.SliderFactory method) (neurocarto.util.debug.Profiler method) (neurocarto.util.debug.TimeMarker method) (neurocarto.util.edit.checking.RequestChannelmapTypeError method) (neurocarto.util.edit.script.BlueprintScript method) (neurocarto.util.util_blueprint.BlueprintFunctions method) (neurocarto.views.atlas.AtlasBrainView method) (neurocarto.views.base.BoundView method) (neurocarto.views.base.ViewBase method) (neurocarto.views.blueprint.BlueprintView method) (neurocarto.views.blueprint.ProbePlotBlueprintProtocol method) (neurocarto.views.blueprint_script.BlueprintScriptView method) (neurocarto.views.blueprint_script.ProbePlotElectrodeProtocol method) (neurocarto.views.data.Data1DView method) (neurocarto.views.data_density.ElectrodeDensityDataView method) (neurocarto.views.data_density.ProbeElectrodeDensityProtocol method) (neurocarto.views.image.FileImageView method) (neurocarto.views.image.ImageHandler method) (neurocarto.views.image.ImageView method) (neurocarto.views.image_npy.NumpyImageHandler method) (neurocarto.views.image_plt.PltImageView method) (neurocarto.views.probe.ProbeView method) (neurocarto.views.record.HistoryView method) (neurocarto.views.record.RecordManager method) (neurocarto.views.view_efficient.ElectrodeEfficiencyData method) (neurocarto.views.view_efficient.ProbeElectrodeEfficiencyProtocol method)

__new__() (neurocarto.probe_npx.npx.ProbeType static method) (neurocarto.probe_npx.npx.ReferenceInfo static method) (neurocarto.probe_npx.stat.ElectrodeProbability static method) (neurocarto.util.atlas_slice.SlicePlane static method) (neurocarto.util.atlas_struct.Structure static method) (neurocarto.util.edit.checking.RequestChannelmapType static method) (neurocarto.util.edit.checking.RequestView static method) (neurocarto.util.edit.clustering.ClusteringEdges static method) (neurocarto.util.edit.script.BlueprintScriptInfo static method) (neurocarto.util.probe_coor.ProbeCoordinate static method) (neurocarto.views.atlas.Label static method) (neurocarto.views.base.RecordStep static method) (neurocarto.views.image_plt.Boundary static method) __setitem__() (neurocarto.util.util_blueprint.BlueprintFunctions method)

A

acronym (neurocarto.util.atlas_struct.Structure attribute) actions (neurocarto.views.blueprint_script.BlueprintScriptState attribute) (neurocarto.views.blueprint_script.BlueprintScriptView attribute) add_electrode() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.probe_npx.npx.ChannelMap method) add_electrodes() (neurocarto.util.util_blueprint.BlueprintFunctions method) add_label() (neurocarto.views.atlas.AtlasBrainView method) add_record() (neurocarto.views.base.RecordView method) add_script() (neurocarto.views.blueprint_script.BlueprintScriptView method) alias() (neurocarto.util.atlas_struct.Structures method) all_channels() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) all_electrodes() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) all_possible_categories() (neurocarto.probe.ProbeDesp class method) all_possible_states() (neurocarto.probe.ProbeDesp class method) alpha (neurocarto.views.image_npy.NumpyImageHandler property) always_save_blueprint_file (neurocarto.main_app.CartoUserConfig attribute) angle_offset() (neurocarto.util.atlas_slice.SliceView method) ap_band_gain (neurocarto.probe_npx.npx.Electrode attribute) ap_hp_filter (neurocarto.probe_npx.npx.Electrode attribute) apply_blueprint() (neurocarto.util.util_blueprint.BlueprintFunctions method) arr_to_dict() (neurocarto.views.data.Data1DView class method) as_callback() (in module neurocarto.util.bokeh_util) as_dict() (neurocarto.views.base.RecordStep method) as_um() (neurocarto.views.image_plt.Boundary method) atlas_add_label() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_clear_labels() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_coor_electrode() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_current_probe() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method)

atlas_del_label() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_focus_label() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_get_label() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_get_region() (in module neurocarto.util.edit.atlas) atlas_get_region_name() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_get_slice() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_mask_region() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_name (neurocarto.config.CartoConfig attribute) atlas_new_probe() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_root (neurocarto.config.CartoConfig attribute) atlas_set_anchor() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_set_anchor_on_probe() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_set_slice() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) atlas_set_transform() (in module neurocarto.util.edit.atlas) (neurocarto.util.util_blueprint.BlueprintFunctions method) AtlasBrainView (class in neurocarto.views.atlas) AtlasBrainViewState (class in neurocarto.views.atlas) auto_btn (neurocarto.main_app.CartoApp attribute) ax (neurocarto.util.atlas_slice.SlicePlane attribute) ax_extent (neurocarto.views.image_plt.Boundary property) ax_extent_px (neurocarto.views.image_plt.Boundary property) ax_height (neurocarto.views.image_plt.Boundary property) ax_height_px (neurocarto.views.image_plt.Boundary property) ax_width (neurocarto.views.image_plt.Boundary property) ax_width_px (neurocarto.views.image_plt.Boundary property) ay (neurocarto.util.atlas_slice.SlicePlane attribute)

B

bank_a (neurocarto.probe_npx.npx.Electrode attribute) bank_b (neurocarto.probe_npx.npx.Electrode attribute) bbox (neurocarto.views.image_plt.Boundary attribute) blueprint (neurocarto.views.blueprint.ProbePlotBlueprintCallback attribute) (neurocarto.views.data.DataView attribute) blueprint() (neurocarto.util.util_blueprint.BlueprintFunctions method) blueprint_changed (neurocarto.util.util_blueprint.BlueprintFunctions property) blueprint_function() (in module neurocarto.util.util_blueprint) BlueprintFunctions (class in neurocarto.util.util_blueprint) BlueprintScript (class in neurocarto.util.edit.script) BlueprintScriptInfo (class in neurocarto.util.edit.script) BlueprintScriptState (class in neurocarto.views.blueprint_script) BlueprintScriptView (class in neurocarto.views.blueprint_script)

BlueprintView (class in neurocarto.views.blueprint) BokehApplication (class in neurocarto.util.bokeh_app) BokehServerConfig (class in neurocarto.util.bokeh_app) Boundary (class in neurocarto.views.image_plt) boundary_rotate_slider (neurocarto.views.base.BoundView attribute) boundary_scale_slider (neurocarto.views.base.BoundView attribute) BoundaryState (class in neurocarto.views.base) BoundView (class in neurocarto.views.base) bp (neurocarto.views.blueprint.ProbePlotBlueprintCallback attribute) brain (neurocarto.util.atlas_slice.SliceView attribute) bregma (neurocarto.util.probe_coor.ProbeCoordinate attribute) build_command() (neurocarto.util.debug.Profiler method) BUILTIN_ACTIONS (neurocarto.views.blueprint_script.BlueprintScriptView attribute) ButtonFactory (class in neurocarto.util.bokeh_util)

C

c_space (neurocarto.probe_npx.npx.ProbeType attribute) cache_blueprint (neurocarto.views.blueprint.BlueprintView attribute) (neurocarto.views.blueprint_script.BlueprintScriptView attribute) cache_chmap (neurocarto.views.blueprint.BlueprintView attribute) (neurocarto.views.blueprint_script.BlueprintScriptView attribute) cache_data (neurocarto.views.blueprint_script.BlueprintScriptView attribute) cache_probe (neurocarto.views.blueprint.BlueprintView attribute) (neurocarto.views.blueprint_script.BlueprintScriptView attribute) call_script() (in module neurocarto.util.edit.actions) (neurocarto.util.util_blueprint.BlueprintFunctions method) capture_electrode() (in module neurocarto.util.edit.probe) (neurocarto.util.util_blueprint.BlueprintFunctions method) captured_electrodes() (in module neurocarto.util.edit.probe) (neurocarto.util.util_blueprint.BlueprintFunctions method) CartoApp (class in neurocarto.main_app) CartoAppIndex (class in neurocarto.main_index) CartoConfig (class in neurocarto.config) CartoUserConfig (class in neurocarto.main_app) cast_electrode_curve() (in module neurocarto.probe_npx.plot) cast_electrode_data() (in module neurocarto.probe_npx.plot) cast_electrode_grid() (in module neurocarto.probe_npx.plot) CATE_EXCLUDED (neurocarto.probe.ProbeDesp attribute) (neurocarto.util.util_blueprint.BlueprintFunctions attribute) CATE_FULL (neurocarto.probe_npx.desp.NpxProbeDesp attribute) CATE_HALF (neurocarto.probe_npx.desp.NpxProbeDesp attribute) CATE_LOW (neurocarto.probe.ProbeDesp attribute) (neurocarto.util.util_blueprint.BlueprintFunctions attribute) CATE_QUARTER (neurocarto.probe_npx.desp.NpxProbeDesp attribute) CATE_SET (neurocarto.probe.ProbeDesp attribute) (neurocarto.util.util_blueprint.BlueprintFunctions attribute) CATE_UNSET (neurocarto.probe.ProbeDesp attribute) (neurocarto.util.util_blueprint.BlueprintFunctions attribute) categories (neurocarto.util.util_blueprint.BlueprintFunctions attribute) category (neurocarto.probe.ElectrodeDesp attribute) (neurocarto.util.edit.clustering.ClusteringEdges attribute) (neurocarto.views.base.RecordStep attribute) category_description() (neurocarto.probe.ProbeDesp method) category_filter (neurocarto.views.record.HistoryView attribute) category_legend_div (neurocarto.views.blueprint.BlueprintView attribute) category_mask() (in module neurocarto.util.edit.category) center (neurocarto.views.image_plt.Boundary property) change_resource_root() (neurocarto.main_app.CartoApp method) channel (neurocarto.probe.ElectrodeDesp attribute) (neurocarto.probe_npx.desp.NpxElectrodeDesp attribute) (neurocarto.probe_npx.npx.ReferenceInfo attribute) channel_coordinate() (in module neurocarto.probe_npx.npx) (in module neurocarto.probe_npx.plot) channel_efficiency (neurocarto.probe_npx.stat.ElectrodeProbability property) channel_efficiency_ (neurocarto.probe_npx.stat.ElectrodeProbability attribute) channel_efficiency_mean (neurocarto.probe_npx.stat.ElectrodeProbability property) channel_efficiency_var (neurocarto.probe_npx.stat.ElectrodeProbability property) channel_pos (neurocarto.probe_npx.npx.ChannelMap property) channel_pos_x (neurocarto.probe_npx.npx.ChannelMap property) channel_pos_y (neurocarto.probe_npx.npx.ChannelMap property) channel_shank (neurocarto.probe_npx.npx.ChannelMap property)

ChannelHasUsedError ChannelMap (class in neurocarto.probe_npx.npx) channelmap (neurocarto.util.util_blueprint.BlueprintFunctions attribute) (neurocarto.views.blueprint.ProbePlotBlueprintCallback attribute) (neurocarto.views.data.DataView attribute) channelmap_code() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) channelmap_desp() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) channelmap_file_suffix (neurocarto.probe.ProbeDesp property) (neurocarto.probe_npx.desp.NpxProbeDesp property) channelmap_root() (in module neurocarto.files) channels (neurocarto.probe_npx.npx.ChannelMap property) check (neurocarto.util.edit.checking.RequestChannelmapType attribute) check_changed() (neurocarto.util.edit.script.BlueprintScriptInfo method) check_probe() (in module neurocarto.util.edit.checking) (neurocarto.util.util_blueprint.BlueprintFunctions method) checkbox_group (neurocarto.views.blueprint.BlueprintView attribute) chmap_root (neurocarto.config.CartoConfig attribute) cleanup() (neurocarto.main_app.CartoApp method) (neurocarto.main_index.CartoAppIndex method) (neurocarto.util.bokeh_app.BokehApplication method) clear_blueprint() (neurocarto.util.util_blueprint.BlueprintFunctions method) clear_btn (neurocarto.views.record.HistoryView attribute) clear_capture_electrode() (in module neurocarto.util.edit.probe) (neurocarto.util.util_blueprint.BlueprintFunctions method) clear_electrode() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) clear_history() (neurocarto.views.record.RecordManager method) clear_labels() (neurocarto.views.atlas.AtlasBrainView method) clone() (neurocarto.util.util_blueprint.BlueprintFunctions method) closest_point_index() (in module neurocarto.util.util_numpy) clustering_edges() (in module neurocarto.util.edit.clustering) (neurocarto.util.util_blueprint.BlueprintFunctions method) ClusteringEdges (class in neurocarto.util.edit.clustering) code (neurocarto.probe_npx.npx.ProbeType attribute) (neurocarto.probe_npx.npx.ReferenceInfo attribute) (neurocarto.util.edit.checking.RequestChannelmapType attribute) col_layout() (in module neurocarto.util.bokeh_util) color (neurocarto.util.atlas_struct.Structure attribute) (neurocarto.views.atlas.Label attribute) column (neurocarto.probe_npx.npx.Electrode attribute) complete (neurocarto.probe_npx.stat.ElectrodeProbability attribute) complete_rate (neurocarto.probe_npx.stat.ElectrodeProbability property) concat() (neurocarto.probe_npx.stat.ElectrodeProbability class method) config_file (neurocarto.config.CartoConfig attribute) ControllerView (class in neurocarto.views.base) copy() (neurocarto.probe.ElectrodeDesp method) (neurocarto.probe_npx.npx.Electrode method) copy_channelmap() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) copy_electrode() (neurocarto.probe.ProbeDesp method) coronal (neurocarto.util.atlas_slice.Projection attribute) count_categories() (neurocarto.util.util_blueprint.BlueprintFunctions method) create (neurocarto.util.edit.checking.RequestChannelmapType attribute) current_resource_root() (neurocarto.main_app.CartoApp method)

D

data() (neurocarto.views.data.Data1DView method) (neurocarto.views.data.DataView method) (neurocarto.views.data_density.ElectrodeDensityDataView method) Data1DView (class in neurocarto.views.data) data_blueprint (neurocarto.views.blueprint.BlueprintView attribute) data_boundary (neurocarto.views.base.BoundView attribute) data_electrode (neurocarto.views.data.DataView attribute) data_electrodes (neurocarto.views.probe.ProbeView attribute) data_input (neurocarto.views.data.FileDataView attribute) DataView (class in neurocarto.views.data) debug (neurocarto.config.CartoConfig attribute) del_electrode() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.probe_npx.npx.ChannelMap method) del_electrodes() (neurocarto.util.util_blueprint.BlueprintFunctions method) del_label() (neurocarto.views.atlas.AtlasBrainView method) delete_btn (neurocarto.views.record.HistoryView attribute) depth (neurocarto.util.probe_coor.ProbeCoordinate attribute)

description (neurocarto.probe_npx.views.NpxReferenceControl property) (neurocarto.views.base.RecordStep attribute) (neurocarto.views.base.ViewBase property) (neurocarto.views.blueprint.BlueprintView property) (neurocarto.views.data_density.ElectrodeDensityDataView property) (neurocarto.views.view_efficient.ElectrodeEfficiencyData property) description_filter (neurocarto.views.record.HistoryView attribute) dh (neurocarto.util.atlas_slice.SlicePlane attribute) disable_save_global_state (neurocarto.views.base.GlobalStateView attribute) disable_toggle (neurocarto.views.record.HistoryView attribute) disconnect_channels() (neurocarto.probe_npx.npx.ChannelMap method) doc_link() (in module neurocarto.util.utils) draw() (in module neurocarto.util.edit.actions) (neurocarto.util.util_blueprint.BlueprintFunctions method) dump_file() (neurocarto.util.debug.Profiler method) dw (neurocarto.util.atlas_slice.SlicePlane attribute) dx (neurocarto.views.base.BoundaryState attribute) dy (neurocarto.views.base.BoundaryState attribute) DynamicView (class in neurocarto.views.base)

E

edge_rastering() (in module neurocarto.util.edit.clustering) (neurocarto.util.util_blueprint.BlueprintFunctions method) edges (neurocarto.util.edit.clustering.ClusteringEdges attribute) EditorView (class in neurocarto.views.base) Electrode (class in neurocarto.probe_npx.npx) electrode (neurocarto.probe.ElectrodeDesp attribute) (neurocarto.probe_npx.desp.NpxElectrodeDesp attribute) electrode_coordinate() (in module neurocarto.probe_npx.npx) (in module neurocarto.probe_npx.plot) electrode_select() (in module neurocarto.probe_npx.select) (in module neurocarto.probe_npx.select_default) (in module neurocarto.probe_npx.select_random) (in module neurocarto.probe_npx.select_weaker)

ElectrodeDensityDataView (class in neurocarto.views.data_density) ElectrodeDesp (class in neurocarto.probe) ElectrodeEfficiencyData (class in neurocarto.views.view_efficient) ElectrodeProbability (class in neurocarto.probe_npx.stat) electrodes (neurocarto.probe_npx.npx.ChannelMap property) (neurocarto.util.util_blueprint.BlueprintFunctions attribute) ElectrodeSelector (class in neurocarto.probe_npx.select) eval() (neurocarto.util.edit.script.BlueprintScriptInfo method) extend() (in module neurocarto.util.edit.moving) (neurocarto.util.util_blueprint.BlueprintFunctions method) ExtensionView (class in neurocarto.views.base) extra_controls() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) extra_view (neurocarto.config.CartoConfig attribute)

F

fg_extent (neurocarto.views.image_plt.Boundary property) fg_height (neurocarto.views.image_plt.Boundary property) fg_height_px (neurocarto.views.image_plt.Boundary property) fg_width (neurocarto.views.image_plt.Boundary property) fg_width_px (neurocarto.views.image_plt.Boundary property) fg_xlim (neurocarto.views.image_plt.Boundary property) fg_ylim (neurocarto.views.image_plt.Boundary property) Figure (in module neurocarto.views.base) FileDataView (class in neurocarto.views.data) FileImageView (class in neurocarto.views.image) filepath (neurocarto.util.edit.script.BlueprintScriptInfo attribute) fill() (in module neurocarto.util.edit.moving) (neurocarto.util.util_blueprint.BlueprintFunctions method) filter_records() (neurocarto.views.base.RecordView method) (neurocarto.views.blueprint_script.BlueprintScriptView method) (neurocarto.views.probe.ProbeView method)

find_clustering() (in module neurocarto.util.edit.clustering) (neurocarto.util.util_blueprint.BlueprintFunctions method) find_label() (neurocarto.views.atlas.AtlasBrainView method) focus_label() (neurocarto.views.atlas.AtlasBrainView method) format_html_doc() (in module neurocarto.util.edit.script) from_blueprint() (neurocarto.util.util_blueprint.BlueprintFunctions method) from_dict() (neurocarto.views.base.RecordStep class method) from_file() (neurocarto.views.image.ImageHandler class method) from_imro() (neurocarto.probe_npx.npx.ChannelMap class method) from_meta() (neurocarto.probe_npx.npx.ChannelMap class method) from_probe() (in module neurocarto.probe_npx.io) (neurocarto.probe_npx.npx.ChannelMap class method)

G

generate_channelmap() (in module neurocarto.util.edit.optimize) get_app() (neurocarto.views.base.ControllerView method) get_atlas_brain() (in module neurocarto.util.atlas_brain) get_blueprint_file() (in module neurocarto.files) (neurocarto.main_app.CartoApp method) get_boundary_state() (neurocarto.views.base.BoundView method) get_captured_electrodes() (neurocarto.views.probe.ProbeView method) get_captured_electrodes_index() (neurocarto.views.probe.ProbeView method) get_channel() (neurocarto.probe_npx.npx.ChannelMap method) get_channelmap_file() (in module neurocarto.files) get_chmap_file() (neurocarto.main_app.CartoApp method) get_current_plt_boundary() (in module neurocarto.views.image_plt) get_current_plt_image() (in module neurocarto.views.image_plt) get_data() (neurocarto.util.util_blueprint.BlueprintFunctions method) get_editor_userconfig() (neurocarto.main_app.CartoApp method) get_electrode() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.probe_npx.npx.ChannelMap method)

get_electrodes() (neurocarto.views.probe.ProbeView method) get_history() (neurocarto.views.record.RecordManager method) get_history_file() (neurocarto.views.record.RecordManager method) get_import_file() (in module neurocarto.util.utils) get_label() (neurocarto.views.atlas.AtlasBrainView method) get_plane_at() (in module neurocarto.util.probe_coor) get_probe_desp() (in module neurocarto.probe) get_script() (neurocarto.views.blueprint_script.BlueprintScriptView method) get_server_config() (in module neurocarto.util.bokeh_app) get_surrounding() (in module neurocarto.util.edit.surrounding) get_use_probe() (in module neurocarto.util.edit.checking) get_use_view() (in module neurocarto.util.edit.checking) get_view() (neurocarto.views.base.ControllerView method) get_view_config_file() (in module neurocarto.files) (neurocarto.main_app.CartoApp method) GlobalStateView (class in neurocarto.views.base) grid_x (neurocarto.util.atlas_slice.SliceView attribute) grid_y (neurocarto.util.atlas_slice.SliceView attribute)

H

has_history() (neurocarto.views.record.RecordManager method) has_script() (in module neurocarto.util.edit.actions) (neurocarto.util.util_blueprint.BlueprintFunctions method) height (neurocarto.util.atlas_slice.SlicePlane property) (neurocarto.util.atlas_slice.SliceView property) (neurocarto.views.atlas.AtlasBrainView property) (neurocarto.views.base.BoundView property) (neurocarto.views.image.ImageHandler property) (neurocarto.views.image.ImageView property) (neurocarto.views.image_npy.NumpyImageHandler property)

height_um (neurocarto.util.atlas_slice.SliceView property) history (neurocarto.main_app.CartoUserConfig attribute) (neurocarto.views.record.RecordManager property) history_step_data (neurocarto.views.record.HistoryView attribute) history_step_table (neurocarto.views.record.HistoryView attribute) history_step_view (neurocarto.views.record.HistoryView attribute) HistoryView (class in neurocarto.views.record)

I

id (neurocarto.util.atlas_struct.Structure attribute) id_path (neurocarto.util.atlas_struct.Structure attribute) image (neurocarto.util.atlas_slice.SlicePlane property) image_annotation() (neurocarto.util.atlas_struct.Structures method) image_of() (neurocarto.util.atlas_slice.SlicePlane method) ImageHandler (class in neurocarto.views.image) ImageView (class in neurocarto.views.image) ImageViewState (class in neurocarto.views.image) import_name() (in module neurocarto.util.utils) import_view() (in module neurocarto.views.utils) imro_table (neurocarto.probe_npx.meta.NpxMeta attribute) in_used (neurocarto.probe_npx.npx.Electrode attribute) index() (neurocarto.main_app.CartoApp method) (neurocarto.main_index.CartoAppIndex method) (neurocarto.util.bokeh_app.BokehApplication method) index_blueprint() (neurocarto.util.util_blueprint.BlueprintFunctions method) index_label() (neurocarto.views.atlas.AtlasBrainView method) index_of() (in module neurocarto.util.util_numpy) init_view() (in module neurocarto.views.utils) input (neurocarto.util.bokeh_util.PathAutocompleteInput attribute) input_imro (neurocarto.main_app.CartoApp attribute)

install_right_panel_views() (neurocarto.main_app.CartoApp method) install_view() (in module neurocarto.views.utils) interpolate_nan() (in module neurocarto.util.edit.data) (in module neurocarto.util.util_numpy) (neurocarto.util.util_blueprint.BlueprintFunctions method) interrupt_script() (in module neurocarto.util.edit.actions) (neurocarto.util.util_blueprint.BlueprintFunctions method) (neurocarto.views.blueprint_script.BlueprintScriptView method) invalid() (in module neurocarto.util.edit.category) (neurocarto.util.util_blueprint.BlueprintFunctions method) invalid_electrodes() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) InvisibleView (class in neurocarto.views.base) is_sorted() (in module neurocarto.util.util_numpy) is_subregion() (neurocarto.util.atlas_struct.Structures method) is_supported() (neurocarto.views.base.ExtensionView class method) (neurocarto.views.data_density.ElectrodeDensityDataView class method) (neurocarto.views.view_efficient.ElectrodeEfficiencyData class method) is_valid() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) iter_subregions() (neurocarto.util.atlas_struct.Structures method)

L

Label (class in neurocarto.views.atlas) len_label() (neurocarto.views.atlas.AtlasBrainView method) lf_band_gain (neurocarto.probe_npx.npx.Electrode attribute) line_mark() (in module neurocarto.util.debug) list_channelmap_files() (in module neurocarto.files) list_chmap_files() (neurocarto.main_app.CartoApp method) list_history_names() (neurocarto.views.record.RecordManager method) load() (neurocarto.util.edit.script.BlueprintScriptInfo class method) load_blueprint() (neurocarto.main_app.CartoApp method) (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.util.util_blueprint.BlueprintFunctions method) load_chmap() (neurocarto.main_app.CartoApp method) load_csv_data() (in module neurocarto.util.edit.data) load_data() (in module neurocarto.util.edit.data) (neurocarto.util.util_blueprint.BlueprintFunctions method) (neurocarto.views.data.FileDataView method)

load_date_from_blueprint_file() (in module neurocarto.util.edit.data) load_file() (neurocarto.main_app.CartoApp method) load_from_file() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) load_history() (neurocarto.views.record.HistoryView method) (neurocarto.views.record.RecordManager method) load_imro() (in module neurocarto.probe_npx.io) load_meta() (in module neurocarto.probe_npx.io) load_select() (in module neurocarto.probe_npx.select) load_user_config() (in module neurocarto.files) (neurocarto.main_app.CartoApp method) load_view_config() (neurocarto.main_app.CartoApp method) log_clear() (neurocarto.main_app.CartoApp method) log_message() (in module neurocarto.util.edit.actions) (neurocarto.main_app.CartoApp method) (neurocarto.util.util_blueprint.BlueprintFunctions method) (neurocarto.views.base.ViewBase method) logger (neurocarto.views.base.ViewBase attribute)

M

main() (in module neurocarto.main_app) (in module neurocarto.main_index) mask() (neurocarto.util.util_blueprint.BlueprintFunctions method) match_probe() (neurocarto.util.edit.checking.RequestChannelmapType method) max_reference_value() (neurocarto.probe_npx.npx.ReferenceInfo class method) merge() (neurocarto.util.util_blueprint.BlueprintFunctions method) merge_blueprint() (in module neurocarto.util.edit.category) message_area (neurocarto.main_app.CartoApp attribute) misc_profile_script() (neurocarto.util.util_blueprint.BlueprintFunctions method) mode (neurocarto.util.bokeh_util.PathAutocompleteInput property) module neurocarto.config neurocarto.files neurocarto.main_app neurocarto.main_index neurocarto.probe neurocarto.probe_npx.desp neurocarto.probe_npx.io neurocarto.probe_npx.meta neurocarto.probe_npx.npx neurocarto.probe_npx.plot neurocarto.probe_npx.select neurocarto.probe_npx.select_default neurocarto.probe_npx.select_random neurocarto.probe_npx.select_weaker neurocarto.probe_npx.stat neurocarto.probe_npx.utils neurocarto.probe_npx.views neurocarto.util.atlas_brain neurocarto.util.atlas_slice neurocarto.util.atlas_struct neurocarto.util.bokeh_app neurocarto.util.bokeh_util neurocarto.util.debug neurocarto.util.edit.actions neurocarto.util.edit.atlas neurocarto.util.edit.category neurocarto.util.edit.checking neurocarto.util.edit.clustering neurocarto.util.edit.data neurocarto.util.edit.debug neurocarto.util.edit.moving neurocarto.util.edit.optimize neurocarto.util.edit.plot neurocarto.util.edit.probe neurocarto.util.edit.script neurocarto.util.edit.surrounding neurocarto.util.probe_coor neurocarto.util.util_blueprint neurocarto.util.util_numpy neurocarto.util.utils neurocarto.views neurocarto.views.atlas neurocarto.views.base neurocarto.views.blueprint neurocarto.views.blueprint_script neurocarto.views.data neurocarto.views.data_density neurocarto.views.image neurocarto.views.image_npy neurocarto.views.image_plt neurocarto.views.probe neurocarto.views.record neurocarto.views.utils neurocarto.views.view_efficient

module (neurocarto.util.edit.script.BlueprintScriptInfo attribute) move() (in module neurocarto.util.edit.moving) (neurocarto.util.util_blueprint.BlueprintFunctions method) move_i() (in module neurocarto.util.edit.moving) (neurocarto.util.util_blueprint.BlueprintFunctions method)

N

n_ap (neurocarto.util.atlas_slice.SliceView property) n_bank (neurocarto.probe_npx.npx.ProbeType property) n_channels (neurocarto.probe_npx.npx.ChannelMap property) (neurocarto.probe_npx.npx.ProbeType attribute) n_col_shank (neurocarto.probe_npx.npx.ChannelMap property) (neurocarto.probe_npx.npx.ProbeType attribute) n_dv (neurocarto.util.atlas_slice.SliceView property) n_electrode_block (neurocarto.probe_npx.npx.ChannelMap property) n_electrode_shank (neurocarto.probe_npx.npx.ChannelMap property) (neurocarto.probe_npx.npx.ProbeType attribute) n_ml (neurocarto.util.atlas_slice.SliceView property) n_plane (neurocarto.util.atlas_slice.SliceView property) n_reference (neurocarto.probe_npx.npx.ProbeType attribute) n_row_shank (neurocarto.probe_npx.npx.ChannelMap property) (neurocarto.probe_npx.npx.ProbeType property) n_shank (neurocarto.probe_npx.npx.ChannelMap property) (neurocarto.probe_npx.npx.ProbeType attribute) name (neurocarto.probe_npx.views.NpxBadElectrodesView property) (neurocarto.probe_npx.views.NpxReferenceControl property) (neurocarto.util.atlas_struct.Structure attribute) (neurocarto.util.edit.script.BlueprintScriptInfo attribute) (neurocarto.views.atlas.AtlasBrainView property) (neurocarto.views.base.ViewBase property) (neurocarto.views.blueprint.BlueprintView property) (neurocarto.views.blueprint_script.BlueprintScriptView property) (neurocarto.views.data.FileDataView property) (neurocarto.views.data_density.ElectrodeDensityDataView property) (neurocarto.views.image.FileImageView property) (neurocarto.views.image.ImageView property) (neurocarto.views.image_plt.PltImageView property) (neurocarto.views.probe.ProbeView property) (neurocarto.views.record.HistoryView property) (neurocarto.views.view_efficient.ElectrodeEfficiencyData property) neurocarto.config module neurocarto.files module neurocarto.main_app module neurocarto.main_index module neurocarto.probe module neurocarto.probe_npx.desp module neurocarto.probe_npx.io module neurocarto.probe_npx.meta module neurocarto.probe_npx.npx module neurocarto.probe_npx.plot module neurocarto.probe_npx.select module neurocarto.probe_npx.select_default module neurocarto.probe_npx.select_random module neurocarto.probe_npx.select_weaker module neurocarto.probe_npx.stat module neurocarto.probe_npx.utils module neurocarto.probe_npx.views module neurocarto.util.atlas_brain module neurocarto.util.atlas_slice module neurocarto.util.atlas_struct module neurocarto.util.bokeh_app module neurocarto.util.bokeh_util module neurocarto.util.debug module neurocarto.util.edit.actions module neurocarto.util.edit.atlas module

neurocarto.util.edit.category module neurocarto.util.edit.checking module neurocarto.util.edit.clustering module neurocarto.util.edit.data module neurocarto.util.edit.debug module neurocarto.util.edit.moving module neurocarto.util.edit.optimize module neurocarto.util.edit.plot module neurocarto.util.edit.probe module neurocarto.util.edit.script module neurocarto.util.edit.surrounding module neurocarto.util.probe_coor module neurocarto.util.util_blueprint module neurocarto.util.util_numpy module neurocarto.util.utils module neurocarto.views module neurocarto.views.atlas module neurocarto.views.base module neurocarto.views.blueprint module neurocarto.views.blueprint_script module neurocarto.views.data module neurocarto.views.data_density module neurocarto.views.image module neurocarto.views.image_npy module neurocarto.views.image_plt module neurocarto.views.probe module neurocarto.views.record module neurocarto.views.utils module neurocarto.views.view_efficient module new_blueprint() (neurocarto.util.util_blueprint.BlueprintFunctions method) new_blueprint_function() (neurocarto.views.base.ControllerView method) (neurocarto.views.data.DataView method) new_channelmap() (in module neurocarto.util.edit.probe) (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.util.util_blueprint.BlueprintFunctions method) new_config() (neurocarto.main_index.CartoAppIndex method) new_help_button() (in module neurocarto.util.bokeh_util) new_parser() (in module neurocarto.config) no_open_browser (neurocarto.config.CartoConfig attribute) npx24_half_density() (in module neurocarto.probe_npx.utils) npx24_one_eighth_density() (in module neurocarto.probe_npx.utils) npx24_quarter_density() (in module neurocarto.probe_npx.utils) npx24_single_shank() (in module neurocarto.probe_npx.utils) npx24_stripe() (in module neurocarto.probe_npx.utils) npx_channel_efficiency() (in module neurocarto.probe_npx.stat) npx_electrode_density() (in module neurocarto.probe_npx.stat) npx_electrode_probability() (in module neurocarto.probe_npx.stat) npx_request_electrode() (in module neurocarto.probe_npx.stat) NpxBadElectrodesView (class in neurocarto.probe_npx.views) NpxElectrodeDesp (class in neurocarto.probe_npx.desp) NpxMeta (class in neurocarto.probe_npx.meta) NpxProbeDesp (class in neurocarto.probe_npx.desp) NpxReferenceControl (class in neurocarto.probe_npx.views) NumpyImageHandler (class in neurocarto.views.image_npy)

O

of() (neurocarto.probe_npx.npx.ReferenceInfo class method) (neurocarto.util.atlas_struct.Structures class method) offset() (neurocarto.util.atlas_slice.SliceView method) offset_angle() (neurocarto.util.atlas_slice.SlicePlane method) (neurocarto.util.atlas_slice.SliceView method) on_add_record() (neurocarto.views.record.HistoryView method) on_autoupdate() (neurocarto.main_app.CartoApp method) on_boundary_transform() (neurocarto.views.atlas.AtlasBrainView method) (neurocarto.views.base.BoundView method) (neurocarto.views.image.ImageView method) on_category_change() (neurocarto.main_app.CartoApp method) on_clear() (neurocarto.views.record.HistoryView method) on_data_selected() (neurocarto.views.data.FileDataView method) on_data_update() (neurocarto.views.blueprint_script.BlueprintScriptView method) on_delete() (neurocarto.views.record.HistoryView method) on_load() (neurocarto.main_app.CartoApp method) on_new() (neurocarto.main_app.CartoApp method) on_probe_update() (neurocarto.main_app.CartoApp method) (neurocarto.probe_npx.views.NpxBadElectrodesView method) (neurocarto.probe_npx.views.NpxReferenceControl method) (neurocarto.views.base.DynamicView method) (neurocarto.views.blueprint.BlueprintView method) (neurocarto.views.blueprint_script.BlueprintScriptView method) (neurocarto.views.data.DataView method) (neurocarto.views.view_efficient.ElectrodeEfficiencyData method)

on_refresh() (neurocarto.main_app.CartoApp method) on_replay() (neurocarto.views.record.HistoryView method) on_save() (neurocarto.main_app.CartoApp method) on_state_change() (neurocarto.main_app.CartoApp method) on_visible() (neurocarto.views.base.InvisibleView method) (neurocarto.views.blueprint.BlueprintView method) open_file (neurocarto.config.CartoConfig attribute) optimize_channelmap() (in module neurocarto.util.edit.optimize) options (neurocarto.views.blueprint.ProbePlotBlueprintCallback attribute) origin_px (neurocarto.views.image_plt.Boundary property) output_imro (neurocarto.main_app.CartoApp attribute) overwrite_chmap_file (neurocarto.main_app.CartoUserConfig attribute)

P

parse() (neurocarto.probe_npx.npx.ChannelMap class method) parse_cli() (in module neurocarto.config) parse_imro() (in module neurocarto.probe_npx.io) path (neurocarto.util.bokeh_util.PathAutocompleteInput property) PathAutocompleteInput (class in neurocarto.util.bokeh_util) plane (neurocarto.util.atlas_slice.SlicePlane attribute) plane() (neurocarto.util.atlas_slice.SliceView method) plane_at() (neurocarto.util.atlas_slice.SliceView method) plane_idx_at() (neurocarto.util.atlas_slice.SlicePlane method) plane_offset (neurocarto.util.atlas_slice.SlicePlane property) plane_um (neurocarto.util.atlas_slice.SliceView property) plot_blueprint() (in module neurocarto.util.edit.plot) (neurocarto.util.util_blueprint.BlueprintFunctions method) (neurocarto.views.blueprint.BlueprintView method) (neurocarto.views.blueprint.ProbePlotBlueprintCallback method) plot_category_area() (in module neurocarto.probe_npx.plot) plot_channelmap() (neurocarto.util.util_blueprint.BlueprintFunctions method) plot_channelmap_block() (in module neurocarto.probe_npx.plot) plot_channelmap_grid() (in module neurocarto.probe_npx.plot) plot_channelmap_matrix() (in module neurocarto.probe_npx.plot) plot_electrode_block() (in module neurocarto.probe_npx.plot) plot_electrode_curve() (in module neurocarto.probe_npx.plot) plot_electrode_grid() (in module neurocarto.probe_npx.plot) plot_electrode_matrix() (in module neurocarto.probe_npx.plot) plot_figure() (neurocarto.views.image_plt.PltImageView method) plot_probe_shape() (in module neurocarto.probe_npx.plot) PltImageView (class in neurocarto.views.image_plt) point() (neurocarto.views.image_plt.Boundary method) point_px() (neurocarto.views.image_plt.Boundary method) pos (neurocarto.views.atlas.Label attribute) possible_categories (neurocarto.probe.ProbeDesp property) (neurocarto.probe_npx.desp.NpxProbeDesp property) possible_states (neurocarto.probe.ProbeDesp property) (neurocarto.probe_npx.desp.NpxProbeDesp property) prepare_affine_matrix() (in module neurocarto.util.probe_coor) prepare_affine_matrix_both() (in module neurocarto.util.probe_coor)

print_command() (neurocarto.util.debug.Profiler method) print_local() (in module neurocarto.util.edit.debug) print_probe() (in module neurocarto.probe_npx.utils) print_save() (in module neurocarto.util.debug) probability (neurocarto.probe_npx.stat.ElectrodeProbability property) probe (neurocarto.main_app.CartoApp attribute) (neurocarto.util.edit.checking.RequestChannelmapType attribute) (neurocarto.util.util_blueprint.BlueprintFunctions attribute) (neurocarto.views.data.DataView attribute) probe_family (neurocarto.config.CartoConfig attribute) probe_fig (neurocarto.main_app.CartoApp attribute) probe_name (neurocarto.util.edit.checking.RequestChannelmapType property) probe_rule() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) probe_view (neurocarto.main_app.CartoApp attribute) ProbeCoordinate (class in neurocarto.util.probe_coor) ProbeDesp (class in neurocarto.probe) ProbeElectrodeDensityProtocol (class in neurocarto.views.data_density) ProbeElectrodeEfficiencyProtocol (class in neurocarto.views.view_efficient) ProbePlotBlueprintCallback (class in neurocarto.views.blueprint) ProbePlotBlueprintProtocol (class in neurocarto.views.blueprint) ProbePlotElectrodeProtocol (class in neurocarto.views.blueprint_script) ProbeType (class in neurocarto.probe_npx.npx) ProbeView (class in neurocarto.views.probe) profile_script() (in module neurocarto.util.edit.debug) Profiler (class in neurocarto.util.debug) project() (in module neurocarto.util.probe_coor) (neurocarto.util.atlas_slice.SliceView method) project_b2i() (in module neurocarto.util.probe_coor) project_i2b() (in module neurocarto.util.probe_coor) project_index (neurocarto.util.atlas_slice.SliceView property) Projection (class in neurocarto.util.atlas_slice) projection (neurocarto.util.atlas_slice.SlicePlane property) (neurocarto.util.atlas_slice.SliceView attribute) pull_back() (neurocarto.util.atlas_slice.SlicePlane method) (neurocarto.util.atlas_slice.SliceView method) put_data() (neurocarto.util.util_blueprint.BlueprintFunctions method)

R

r_space (neurocarto.probe_npx.npx.ProbeType attribute) record (neurocarto.views.base.RecordStep attribute) RecordManager (class in neurocarto.views.record) RecordStep (class in neurocarto.views.base) RecordView (class in neurocarto.views.base) recursive_call_barrier() (in module neurocarto.util.bokeh_util) reduce() (in module neurocarto.util.edit.moving) (neurocarto.util.util_blueprint.BlueprintFunctions method) ref (neurocarto.views.atlas.Label attribute) reference (neurocarto.probe_npx.npx.ChannelMap property) (neurocarto.util.atlas_slice.SliceView attribute) reference_info (neurocarto.probe_npx.npx.ChannelMap property) ReferenceInfo (class in neurocarto.probe_npx.npx) refresh_selection() (in module neurocarto.util.edit.probe) (neurocarto.util.util_blueprint.BlueprintFunctions method) (neurocarto.views.probe.ProbeView method) regions (neurocarto.util.atlas_struct.Structures property) register() (neurocarto.views.record.RecordManager method) reload() (neurocarto.util.edit.script.BlueprintScriptInfo method) reload_input_file_list() (neurocarto.main_app.CartoApp method) render_blueprint (neurocarto.views.blueprint.BlueprintView attribute) render_boundary (neurocarto.views.base.BoundView attribute) render_electrode (neurocarto.views.data.DataView attribute) replay() (neurocarto.views.record.RecordManager method) replay_record() (neurocarto.probe_npx.views.NpxBadElectrodesView method) (neurocarto.probe_npx.views.NpxReferenceControl method) (neurocarto.views.base.RecordView method) (neurocarto.views.blueprint_script.BlueprintScriptView method) (neurocarto.views.probe.ProbeView method) RequestChannelmapType (class in neurocarto.util.edit.checking)

RequestChannelmapTypeError RequestView (class in neurocarto.util.edit.checking) reset() (neurocarto.util.debug.TimeMarker method) (neurocarto.views.probe.ProbeView method) reset_blueprint() (neurocarto.views.blueprint.BlueprintView method) (neurocarto.views.blueprint.ProbePlotBlueprintCallback method) (neurocarto.views.blueprint_script.BlueprintScriptView method) reset_boundary() (neurocarto.views.base.BoundView method) resolution (neurocarto.util.atlas_slice.SlicePlane property) (neurocarto.util.atlas_slice.SliceView attribute) (neurocarto.views.image.ImageHandler property) restore_global_state() (neurocarto.views.base.GlobalStateView method) restore_state() (neurocarto.views.atlas.AtlasBrainView method) (neurocarto.views.base.StateView method) (neurocarto.views.blueprint_script.BlueprintScriptView method) (neurocarto.views.image.FileImageView method) (neurocarto.views.image_plt.PltImageView method) right_panel_views (neurocarto.main_app.CartoApp attribute) right_panel_views_config (neurocarto.main_app.CartoApp attribute) root (neurocarto.util.bokeh_util.PathAutocompleteInput property) row (neurocarto.probe_npx.npx.Electrode attribute) rt (neurocarto.views.base.BoundaryState attribute) run_command() (neurocarto.util.debug.Profiler method) run_later() (in module neurocarto.util.bokeh_app) run_periodic() (in module neurocarto.util.bokeh_app) run_script() (neurocarto.views.blueprint_script.BlueprintScriptView method) run_server() (in module neurocarto.util.bokeh_app) run_timeout() (in module neurocarto.util.bokeh_app) rx (neurocarto.util.probe_coor.ProbeCoordinate attribute) ry (neurocarto.util.probe_coor.ProbeCoordinate attribute) rz (neurocarto.util.probe_coor.ProbeCoordinate attribute)

S

s (neurocarto.probe.ElectrodeDesp attribute) (neurocarto.util.probe_coor.ProbeCoordinate attribute) (neurocarto.util.util_blueprint.BlueprintFunctions attribute) s_space (neurocarto.probe_npx.npx.ProbeType attribute) sagittal (neurocarto.util.atlas_slice.Projection attribute) same_index() (in module neurocarto.util.util_numpy) sample_times (neurocarto.probe_npx.stat.ElectrodeProbability attribute) save_blueprint() (neurocarto.main_app.CartoApp method) (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.util.util_blueprint.BlueprintFunctions method) save_chmap() (neurocarto.main_app.CartoApp method) save_csv_data() (in module neurocarto.util.edit.data) save_data() (in module neurocarto.util.edit.data) (neurocarto.util.util_blueprint.BlueprintFunctions method) save_data_into_blueprint_file() (in module neurocarto.util.edit.data) save_global_state() (neurocarto.views.base.GlobalStateView method) save_history() (neurocarto.views.record.HistoryView method) (neurocarto.views.record.RecordManager method) save_imro() (in module neurocarto.probe_npx.io) (neurocarto.probe_npx.npx.ChannelMap method) save_input (neurocarto.views.record.HistoryView attribute) save_state() (neurocarto.views.atlas.AtlasBrainView method) (neurocarto.views.base.GlobalStateView method) (neurocarto.views.base.StateView method) (neurocarto.views.image.FileImageView method) save_to_file() (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) save_user_config() (in module neurocarto.files) (neurocarto.main_app.CartoApp method) save_view_config() (neurocarto.main_app.CartoApp method) scale (neurocarto.views.image_plt.Boundary property) scale_x (neurocarto.views.image_plt.Boundary property) scale_y (neurocarto.views.image_plt.Boundary property) script (neurocarto.util.edit.script.BlueprintScriptInfo attribute) script_document (neurocarto.views.blueprint_script.BlueprintScriptView attribute) script_html_doc() (in module neurocarto.util.edit.script) script_input (neurocarto.views.blueprint_script.BlueprintScriptView attribute) script_run (neurocarto.views.blueprint_script.BlueprintScriptView attribute) script_select (neurocarto.views.blueprint_script.BlueprintScriptView attribute) script_use_probe() (neurocarto.util.edit.script.BlueprintScriptInfo method) script_use_view() (neurocarto.util.edit.script.BlueprintScriptInfo method) select_electrodes() (in module neurocarto.util.edit.probe) (neurocarto.probe.ProbeDesp method) (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.util.util_blueprint.BlueprintFunctions method) selected_as_pre_selected (neurocarto.main_app.CartoUserConfig attribute) selected_electrodes() (neurocarto.util.util_blueprint.BlueprintFunctions method) selector (neurocarto.config.CartoConfig attribute) serial_number (neurocarto.probe_npx.meta.NpxMeta attribute) server_address (neurocarto.config.CartoConfig attribute) server_port (neurocarto.config.CartoConfig attribute) set() (neurocarto.util.util_blueprint.BlueprintFunctions method) set_anchor_to() (neurocarto.views.base.BoundView method) set_blueprint() (neurocarto.util.util_blueprint.BlueprintFunctions method) set_category_color() (neurocarto.views.blueprint.BlueprintView method) set_category_for_captured() (in module neurocarto.util.edit.probe) (neurocarto.util.util_blueprint.BlueprintFunctions method) (neurocarto.views.probe.ProbeView method)

set_category_legend() (neurocarto.views.blueprint.ProbePlotBlueprintCallback method) set_channelmap() (neurocarto.util.util_blueprint.BlueprintFunctions method) set_corner() (neurocarto.util.edit.clustering.ClusteringEdges method) set_electrodes() (in module neurocarto.probe_npx.utils) set_highlight() (neurocarto.views.probe.ProbeView method) set_image() (neurocarto.views.image_plt.PltImageView method) set_image_handler() (neurocarto.views.image_plt.PltImageView method) set_script_input() (in module neurocarto.util.edit.actions) (neurocarto.util.util_blueprint.BlueprintFunctions method) set_state_for_captured() (in module neurocarto.util.edit.probe) (neurocarto.util.util_blueprint.BlueprintFunctions method) (neurocarto.views.probe.ProbeView method) set_status() (neurocarto.views.base.ViewBase method) set_status_line() (in module neurocarto.util.edit.actions) (neurocarto.util.util_blueprint.BlueprintFunctions method) setup() (neurocarto.main_index.CartoAppIndex method) (neurocarto.views.atlas.AtlasBrainView method) (neurocarto.views.base.ViewBase method) (neurocarto.views.probe.ProbeView method) setup_boundary() (neurocarto.views.base.BoundView method) setup_data_input() (neurocarto.views.data.FileDataView method) setup_logger() (in module neurocarto.config) setup_rotate_slider() (neurocarto.views.base.BoundView method) setup_scale_slider() (neurocarto.views.base.BoundView method) setup_visible_switch() (neurocarto.views.base.InvisibleView method) shank (neurocarto.probe_npx.npx.Electrode attribute) (neurocarto.probe_npx.npx.ReferenceInfo attribute) (neurocarto.util.edit.clustering.ClusteringEdges attribute) shape (neurocarto.views.image_plt.Boundary attribute) slice (neurocarto.util.atlas_slice.SlicePlane attribute) SlicePlane (class in neurocarto.util.atlas_slice) SliceView (class in neurocarto.util.atlas_slice) SliderFactory (class in neurocarto.util.bokeh_util) sort_structure() (neurocarto.util.atlas_struct.Structures method) source (neurocarto.views.base.RecordStep attribute) source_filter (neurocarto.views.record.HistoryView attribute) start() (neurocarto.main_app.CartoApp method) (neurocarto.util.bokeh_app.BokehApplication method) (neurocarto.views.atlas.AtlasBrainView method) (neurocarto.views.base.ViewBase method) (neurocarto.views.blueprint_script.BlueprintScriptView method) (neurocarto.views.data.DataView method) (neurocarto.views.image.ImageView method) (neurocarto.views.image_plt.PltImageView method) (neurocarto.views.record.HistoryView method) state (neurocarto.probe.ElectrodeDesp attribute) state_description() (neurocarto.probe.ProbeDesp method) STATE_DISABLED (neurocarto.probe.ProbeDesp attribute) STATE_UNUSED (neurocarto.probe.ProbeDesp attribute) STATE_USED (neurocarto.probe.ProbeDesp attribute) StateView (class in neurocarto.views.base) string_imro() (in module neurocarto.probe_npx.io) Structure (class in neurocarto.util.atlas_struct) Structures (class in neurocarto.util.atlas_struct) summation (neurocarto.probe_npx.stat.ElectrodeProbability attribute) supported_type (neurocarto.probe.ProbeDesp property) (neurocarto.probe_npx.desp.NpxProbeDesp property) surrounding() (in module neurocarto.util.edit.surrounding) sx (neurocarto.views.base.BoundaryState attribute) sy (neurocarto.views.base.BoundaryState attribute)

T

text (neurocarto.views.atlas.Label attribute) theme (neurocarto.main_app.CartoUserConfig attribute) time_stamp (neurocarto.util.edit.script.BlueprintScriptInfo attribute) (neurocarto.views.base.RecordStep attribute) TimeMarker (class in neurocarto.util.debug) title (neurocarto.main_app.CartoApp property) (neurocarto.util.bokeh_app.BokehApplication property) to_bregma() (neurocarto.util.probe_coor.ProbeCoordinate method) to_imro() (neurocarto.probe_npx.npx.ChannelMap method) to_numpy() (in module neurocarto.probe_npx.io) (neurocarto.probe_npx.npx.ChannelMap method) to_origin() (neurocarto.util.probe_coor.ProbeCoordinate method)

to_pandas() (in module neurocarto.probe_npx.io) (neurocarto.probe_npx.npx.ChannelMap method) to_polars() (in module neurocarto.probe_npx.io) (neurocarto.probe_npx.npx.ChannelMap method) to_probe() (in module neurocarto.probe_npx.io) (neurocarto.probe_npx.npx.ChannelMap method) tool_boundary (neurocarto.views.base.BoundView attribute) transform() (neurocarto.views.data.Data1DView method) transform_image_data() (neurocarto.views.base.BoundView method) transverse (neurocarto.util.atlas_slice.Projection attribute) type (neurocarto.probe_npx.npx.ReferenceInfo attribute) type_description() (neurocarto.probe.ProbeDesp method)

U

unregister() (neurocarto.views.record.RecordManager method) unset() (neurocarto.util.util_blueprint.BlueprintFunctions method) update() (neurocarto.views.data.DataView method) update_actions_select() (neurocarto.views.blueprint_script.BlueprintScriptView method) update_blueprint() (neurocarto.views.blueprint.BlueprintView method) update_boundary_transform() (neurocarto.views.base.BoundView method) update_electrode() (neurocarto.views.probe.ProbeView method) update_electrode_position() (neurocarto.views.probe.ProbeView method) update_history_table() (neurocarto.views.record.HistoryView method) update_probe() (neurocarto.views.base.EditorView method)

use_probe() (in module neurocarto.util.edit.checking) (in module neurocarto.util.util_blueprint) use_view() (in module neurocarto.util.edit.checking) (in module neurocarto.util.util_blueprint) (neurocarto.util.util_blueprint.BlueprintFunctions method) user_cache_dir() (in module neurocarto.files) user_cache_file() (in module neurocarto.files) user_config_dir() (in module neurocarto.files) user_config_file() (in module neurocarto.files) user_data_dir() (in module neurocarto.files) user_views_config (neurocarto.main_app.CartoApp attribute)

V

value (neurocarto.util.bokeh_util.PathAutocompleteInput property) view_content (neurocarto.views.base.ViewBase attribute) view_ext_blueprint_plot_categories() (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.views.blueprint_script.ProbePlotElectrodeProtocol method) view_ext_blueprint_plot_electrode() (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.views.blueprint_script.ProbePlotElectrodeProtocol method) view_ext_electrode_density() (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.views.data_density.ProbeElectrodeDensityProtocol method) view_ext_plot_blueprint() (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.views.blueprint.ProbePlotBlueprintProtocol method)

view_ext_statistics_info() (neurocarto.probe_npx.desp.NpxProbeDesp method) (neurocarto.views.view_efficient.ProbeElectrodeEfficiencyProtocol method) view_status (neurocarto.views.base.ViewBase attribute) view_title (neurocarto.views.base.ViewBase attribute) view_type (neurocarto.util.edit.checking.RequestView attribute) ViewBase (class in neurocarto.views.base) views (neurocarto.main_app.CartoUserConfig attribute) visible (neurocarto.views.base.InvisibleView property) visible_btn (neurocarto.views.base.InvisibleView attribute)

W

width (neurocarto.util.atlas_slice.SlicePlane property) (neurocarto.util.atlas_slice.SliceView property) (neurocarto.views.atlas.AtlasBrainView property) (neurocarto.views.base.BoundView property) (neurocarto.views.image.ImageHandler property) (neurocarto.views.image.ImageView property) (neurocarto.views.image_npy.NumpyImageHandler property)

width_um (neurocarto.util.atlas_slice.SliceView property) with_anchor() (neurocarto.util.atlas_slice.SlicePlane method) with_category() (neurocarto.util.edit.clustering.ClusteringEdges method) with_offset() (neurocarto.util.atlas_slice.SlicePlane method) with_plane() (neurocarto.util.atlas_slice.SlicePlane method) with_record() (neurocarto.views.base.RecordStep method) with_rotate() (neurocarto.util.atlas_slice.SlicePlane method) with_shank() (neurocarto.util.edit.clustering.ClusteringEdges method)

X

x (neurocarto.probe.ElectrodeDesp attribute) (neurocarto.util.edit.clustering.ClusteringEdges property) (neurocarto.util.probe_coor.ProbeCoordinate attribute) (neurocarto.util.util_blueprint.BlueprintFunctions attribute)

xlim (neurocarto.views.image_plt.Boundary attribute)

Y

y (neurocarto.probe.ElectrodeDesp attribute) (neurocarto.util.edit.clustering.ClusteringEdges property) (neurocarto.util.probe_coor.ProbeCoordinate attribute) (neurocarto.util.util_blueprint.BlueprintFunctions attribute)

ylim (neurocarto.views.image_plt.Boundary attribute)

Z

z (neurocarto.util.probe_coor.ProbeCoordinate attribute)